Microsoft Entra ID + GitHub Enterprise Server integration
Set up Microsoft Entra ID as the identity provider for GitHub Enterprise Server via SAML — for self-hosted GHES with Entra ID federation.
- Entra Application Administrator
- GHES site admin
1. Create a new SAML 2.0 application in Entra ID
In the Entra ID admin console, create a new SAML 2.0 application. Choose "Web Application" type. Note the placeholders for ACS URL + Entity ID — you'll get these from GitHub Enterprise Server in step 3.
2. Get the SAML metadata URL from Entra ID
Entra ID exposes the IdP metadata at a stable URL. Copy this URL — you'll paste it into GitHub Enterprise Server's SSO configuration. Alternatively, download the metadata XML if GitHub Enterprise Server doesn't support URL-based metadata.
3. Configure SSO in GitHub Enterprise Server
In GitHub Enterprise Server's admin → security → SSO settings, paste the Entra ID metadata URL (or upload the XML). GitHub Enterprise Server will display the ACS URL + Entity ID it expects — copy these.
4. Return to Entra ID + complete the SAML app config
Paste GitHub Enterprise Server's ACS URL into the Entra ID app's Single Sign-On URL field. Paste the Entity ID into the Audience URI field. Set the NameID format to EmailAddress (or persistent if GitHub Enterprise Server expects that).
5. Configure attribute mapping
Map the attributes the SP expects (see the Attribute Mapping section below). At minimum, email is required. Most apps also expect firstName + lastName.
6. Assign users + groups
In Entra ID, assign the SAML app to users or groups that should have access. Test with a pilot group before broad rollout.
7. Test end-to-end
Sign in to GitHub Enterprise Server via the IdP-initiated link (from Entra ID dashboard) AND via SP-initiated (direct GitHub Enterprise Server login URL). Both should work. Check the SAML Tracer browser extension or SAML decoder to inspect the assertion if anything fails.
What flows from where.
| Source (Microsoft Entra ID) | Target (GitHub Enterprise Server) | Note |
|---|---|---|
| user.mail | NameID | — |
| user.mail | emails | — |
| user.displayName | name | — |
- Clock skew: Entra ID and GitHub Enterprise Server clocks must be within ~5 minutes. NTP-sync both. SAML's NotBefore + NotOnOrAfter are strict.
- NameID format mismatches are the most common failure. GitHub Enterprise Server typically wants EmailAddress; Entra ID defaults vary. Mismatch → cryptic "invalid assertion" errors.
- Just-in-time (JIT) provisioning vs SCIM: many apps support both. SAML JIT creates the user on first SSO; SCIM creates them ahead of time. Pick one — both can cause attribute drift.
- Audience restriction: GitHub Enterprise Server's expected Audience URI must match exactly what the IdP sends. Trailing slashes + protocol (http vs https) matter.
- Signed Response vs signed Assertion: many SPs require the Assertion to be signed (not just the Response envelope). Check the SP's docs.
- GHES hostname must be reachable from Entra during the SAML flow.
- Enterprise Managed Users (EMU) is GitHub Enterprise Cloud feature — doesn't apply to GHES.
- IdP-initiated SSO works (sign in from the IdP dashboard)
- SP-initiated SSO works (visit GitHub Enterprise Server directly + get redirected to IdP)
- User attributes flow through correctly (email, name, groups)
- Logout (single logout if supported) works as expected
- Step-up MFA fires when policy requires it
- Unauthorized users (not assigned to the app) get a clean denied message
- Capture a successful SAML response and inspect it (use the SAML decoder tool)
For the latest vendor-side configuration changes, refer to:
GHES + Entra SAML →